unique_filter {FastqCleaner} | R Documentation |
This program is a wrapper to
occurrenceFilter
.
It removes the duplicated sequences of a FASTQ file.
unique_filter(input)
input |
|
Filtered ShortReadQ
object
Leandro Roser learoser@gmail.com
require('Biostrings') require('ShortRead') set.seed(10) s <- random_seq(10, 10) s <- sample(s, 30, replace = TRUE) q <- random_qual(30, 10) n <- seq_names(30) my_read <- ShortReadQ(sread = s, quality = q, id = n) # check presence of duplicates isUnique(as.character(sread(my_read))) # apply the filter filtered <- unique_filter(my_read) isUnique(as.character(sread(filtered)))