reducedDims {ExperimentSubset} | R Documentation |
A wrapper to the reducedDims method with additional support for subsets.
reducedDims(object, withDimnames, subsetName) ## S4 method for signature 'ANY' reducedDims(object, withDimnames, subsetName)
object |
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withDimnames |
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subsetName |
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The reducedDims
from the specified subset or same as
link[SingleCellExperiment]reducedDims when subsetName
is
missing
.
data(sce_chcl, package = "scds") es <- ExperimentSubset(sce_chcl) es <- createSubset(es, "subset1", rows = c(1:1500), cols = c(1:1500), parentAssay = "counts") reducedDim(es, type = "PCA_1", subsetName = "subset1") <- scater::calculatePCA( assay(es, "subset1")) reducedDim(es, type = "PCA_2", subsetName = "subset1") <- scater::calculatePCA( assay(es, "subset1")) reducedDims(es, subsetName = "subset1")