reducedDim {ExperimentSubset} | R Documentation |
A wrapper to the reducedDim
from
reducedDims method with additional support for
subsets.
reducedDim(object, type, withDimnames, subsetName) ## S4 method for signature 'ANY' reducedDim(object, type, withDimnames, subsetName)
object |
|
type |
|
withDimnames |
|
subsetName |
|
The reducedDim
from the specified subset or same as
reducedDim
from reducedDims when
subsetName
is missing
.
data(sce_chcl, package = "scds") es <- ExperimentSubset(sce_chcl) es <- createSubset(es, "subset1", rows = c(1:1500), cols = c(1:1500), parentAssay = "counts") reducedDim(es, type = "PCA", subsetName = "subset1") <- scater::calculatePCA( assay(es, "subset1")) reducedDim(es, type = "PCA", subsetName = "subset1")