RankNorm {EBSeq} | R Documentation |
'RankNorm' gives the rank normalization.
RankNorm(Data)
Data |
The data matrix with transcripts in rows and lanes in columns. |
The function will return a matrix contains the normalization factor for each lane and each transcript.
Ning Leng
MedianNorm, QuantileNorm
data(GeneMat) Sizes = RankNorm(GeneMat) # Run EBSeq # EBres = EBTest(Data = GeneData, NgVector = rep(1,10^4), # Vect5End = rep(1,10^4), Vect3End = rep(1,10^4), # Conditions = as.factor(rep(c(1,2), each=5)), # sizeFactors = Sizes, maxround=5)