filterCounts {EBSEA} | R Documentation |
Filtering of exons based on their expression levels
filterCounts(x, mean = 1, exonCount = 1)
x |
A numeric dataframe of exon counts across the samples. Exon number in format GeneName:Exonnumber should be indicated in the row name and sample names as column names. |
mean |
Exons with average count value across the dataset less than mean are filtered out. Default: 1 |
exonCount |
After filtering the individual exons, only genes with at least the given number of exons remaining will be retained. Default: 1 |
A dataframe of filtered counts of exons
data(exonCounts) res <- filterCounts(exonCounts)