getPwmFromFastaFile {DiffLogo}R Documentation

generates a pwm from a FASTA file

Description

generates a pwm from a FASTA file

Usage

getPwmFromFastaFile(filename, alphabet = NULL)

Arguments

filename

the FASTA file

alphabet

the desired alphabet of type Alphabet

Value

a pwm

Examples

fileName = "extdata/alignments/F-box_bacteria.seq.fa"
file = system.file(fileName, package = "DiffLogo")
pwm = getPwmFromFastaFile(file)

[Package DiffLogo version 2.14.0 Index]