diffLogoTable {DiffLogo} | R Documentation |
Draws a table of DiffLogos.
diffLogoTable(PWMs, sampleSizes = NULL, alphabet = DNA, configuration = list(), ...)
PWMs |
a list/vector of position weight matrices (PWMs) each of type pwm, data.frame, or matrix |
sampleSizes |
the number of sequences behind each PWM |
alphabet |
the alphabet of the given PWMs |
configuration |
list of (probably part of) of configuration options. See diffLogoTableConfiguration. |
... |
set of parameters passed to the function 'axis' for plotting |
none (draws table of difference logos)
Martin Nettling
motif_folder= "extdata/pwm" motif_names = c("HepG2","MCF7","HUVEC","ProgFib") motifs = list() for (name in motif_names) { fileName = paste(motif_folder,"/",name,".pwm",sep="") file = system.file(fileName, package = "DiffLogo") motifs[[name]] = getPwmFromPwmFile(file) } diffLogoTable(motifs)