deepblue_tiling_regions {DeepBlueR} | R Documentation |
Generate tiling regions across the genome chromosomes. The idea is to "bin" genomic regions systematically in order to obtain discrete regions over which one can aggregate. Using the 'score_matrix' command, these bins (tiles) can be compared directly across experiments.
deepblue_tiling_regions(size = NULL, genome = NULL, chromosome = NULL, user_key = deepblue_options("user_key"))
size |
- A int (tiling size) |
genome |
- A string (the target genome) |
chromosome |
- A string or a vector of string (chromosome name(s)) |
user_key |
- A string (users token key) |
id - A string (query id)
Other Operating on the data regions: deepblue_aggregate
,
deepblue_binning
,
deepblue_count_regions
,
deepblue_coverage
,
deepblue_distinct_column_values
,
deepblue_extend
,
deepblue_filter_regions
,
deepblue_flank
,
deepblue_get_experiments_by_query
,
deepblue_get_regions
,
deepblue_input_regions
,
deepblue_intersection
,
deepblue_merge_queries
,
deepblue_overlap
,
deepblue_query_cache
,
deepblue_query_experiment_type
,
deepblue_score_matrix
,
deepblue_select_annotations
,
deepblue_select_experiments
,
deepblue_select_regions
deepblue_tiling_regions( size = 10000, genome = "hg19", chromosome = "chr1")