deepblue_select_expressions {DeepBlueR} | R Documentation |
Select expressions (by their name or ID) as genomic regions from the specified model.
deepblue_select_expressions(expression_type = NULL, sample_ids = NULL, replicas = NULL, identifiers = NULL, projects = NULL, gene_model = NULL, user_key = deepblue_options("user_key"))
expression_type |
- A string (expression type (supported: 'gene')) |
sample_ids |
- A string or a vector of string (id(s) of selected sample(s)) |
replicas |
- A int or a vector of int (replica(s)) |
identifiers |
- A string or a vector of string (identifier(s) (for genes: ensembl ID or ENSB name).) |
projects |
- A string or a vector of string (projects(s)) |
gene_model |
- A string (gene model name) |
user_key |
- A string (users token key) |
id - A string (query id)
Other Expression data: deepblue_list_expressions
genes_names = c('CCR1', 'CD164', 'CD1D', 'CD2', 'CD34', 'CD3G', 'CD44') deepblue_select_expressions( expression_type="gene", sample_ids="s10205", identifiers = genes_names, gene_model = "gencode v23")