plotAlignedAnalytes {DIAlignR} | R Documentation |
Plot aligned XICs group for a specific peptide. AlignObjOutput is the output from getAlignObjs fucntion.
plotAlignedAnalytes( AlignObjOutput, plotType = "All", outFile = "AlignedAnalytes.pdf", annotatePeak = FALSE, saveFigs = FALSE )
AlignObjOutput |
(list) list contains fileInfo, AlignObj, raw XICs for reference and experiment, and reference-peak label. |
plotType |
(string) must be one of the strings "All", "onlyUnaligned" and "onlyAligned". |
outFile |
(string) name of the output pdf file. |
annotatePeak |
(logical) TRUE: Peak boundaries and apex will be highlighted. |
saveFigs |
(logical) TRUE: Figures will be saved in AlignedAnalytes.pdf . |
A plot to the current device.
Shubham Gupta, shubh.gupta@mail.utoronto.ca
ORCID: 0000-0003-3500-8152
License: (c) Author (2019) + GPL-3 Date: 2019-12-13
dataPath <- system.file("extdata", package = "DIAlignR") runs <- c("hroest_K120809_Strep0%PlasmaBiolRepl2_R04_SW_filt", "hroest_K120809_Strep10%PlasmaBiolRepl2_R04_SW_filt") AlignObjOutput <- getAlignObjs(analytes = 4618L, runs, dataPath = dataPath) plotAlignedAnalytes(AlignObjOutput)