plotAlignmentPath {DIAlignR} | R Documentation |
Plot aligned path through the similarity matrix. Reference run has indices on X-axis, eXp run has them on Y-axis. In getAlignObjs function, objType must be set to medium.
plotAlignmentPath(AlignObjOutput)
AlignObjOutput |
(list) The list contains AlignObj, raw XICs for reference and experiment, and reference-peak label. |
A plot to the current device.
Shubham Gupta, shubh.gupta@mail.utoronto.ca
ORCID: 0000-0003-3500-8152
License: (c) Author (2019) + GPL-3 Date: 2019-12-13
library(lattice) dataPath <- system.file("extdata", package = "DIAlignR") runs <- c("hroest_K120809_Strep0%PlasmaBiolRepl2_R04_SW_filt", "hroest_K120809_Strep10%PlasmaBiolRepl2_R04_SW_filt") AlignObjOutput <- getAlignObjs(analytes = 4618L, runs, dataPath = dataPath, objType = "medium") plotAlignmentPath(AlignObjOutput)