computeLambdaOnChr {DEScan2} | R Documentation |
computes the lambdas on a chromosome for the winVector windows and other two windows (min/maxCompWinWidth) to compare with
computeLambdaOnChr(chrGRanges, winVector = seq_len(20), minChrRleWComp, minCompWinWidth = 5000, maxChrRleWComp, maxCompWinWidth = 10000, verbose = TRUE)
chrGRanges |
the GRanges representing the reads of the chromosome. |
winVector |
the of width of the windows used to compute the coverage. |
minChrRleWComp |
and Rle object within coverage of window of width minCompWinWidth. |
minCompWinWidth |
the width of the window used for the coverage of minChrRleWComp in bases. |
maxChrRleWComp |
and Rle object within coverage of window of width minCompWinWidth. |
maxCompWinWidth |
the width of the window used for the coverage of maxChrRleWComp in bases. |
verbose |
verbose flag. |
binSize |
the size of the bin in bases. |
an RleList where each element is a window of winVector, within an Rle representing the lambda computed for that window.