binding.site.list {DBChIP} | R Documentation |
Binding site predictions for emb and L1 conditions in a study of transcription factor PHA-4/FOXA in C.elegans
data("PHA4")
List of 2 elements: emb and L1. Each element is a data.frame with fields: chr, strand and weight (optional).
Weight represents a measure of strength of the binding, for example, the number of reads in the peak.
Zhong et al. (2010), Genome-wide identification of binding sites defines distinct functions for Caenorhabditis elegans PHA-4/FOXA in development and environmental response, PLoS Genetics, 6, e1000848.
data(PHA4) names(binding.site.list) head(binding.site.list[["emb"]])