Get_AllComparisons {DAPAR} | R Documentation |
MSnSet
.This method returns a list of the statistical tests performed with DAPAR and recorded
in an object of class MSnSet
.
Get_AllComparisons(obj)
obj |
An object of class |
A list of two slots: logFC and P_Value
Samuel Wieczorek
utils::data(Exp1_R25_pept, package='DAPARdata') obj <- Exp1_R25_pept keepThat <- mvFilterGetIndices(obj, condition='WholeMatrix', threshold=ncol(obj)) obj <- mvFilterFromIndices(obj, keepThat) qData <- Biobase::exprs(obj) sTab <- Biobase::pData(obj) allComp <- limmaCompleteTest(qData,sTab) data <- list(logFC=allComp$logFC[1], P_Value = allComp$P_Value[1]) obj <- diffAnaSave(obj, allComp, data) ll <- Get_AllComparisons(obj)