hc_logFC_DensityPlot {DAPAR}R Documentation

Density plots of logFC values

Description

This function show the density plots of Fold Change (the same as calculated by limma) for a list of the comparisons of conditions in a differnetial analysis.

Usage

hc_logFC_DensityPlot(df_logFC, threshold_LogFC = 0, palette = NULL)

Arguments

df_logFC

A dataframe that contains the logFC values

threshold_LogFC

The threshold on log(Fold Change) to distinguish between differential and non-differential data

palette

xxx

Value

A highcharts density plot

Author(s)

Samuel Wieczorek

Examples

utils::data(Exp1_R25_pept, package='DAPARdata')
obj <- Exp1_R25_pept[1:1000]
keepThat <- mvFilterGetIndices(obj, condition='WholeMatrix', threshold=ncol(obj))
obj <- mvFilterFromIndices(obj, keepThat)
qData <- Biobase::exprs(obj)
sTab <- Biobase::pData(obj)
res <- limmaCompleteTest(qData,sTab)
hc_logFC_DensityPlot(res$logFC, threshold_LogFC=1)


[Package DAPAR version 1.22.9 Index]