plotPieCluster {CytoTree} | R Documentation |
Visualization pie plot of cluster data of CYT
plotPieCluster( object, item.use = c("PC_1", "PC_2"), cex.size = 1, size.by.cell.number = TRUE, main = "2D pie plot of CYT", plot.theme = theme_bw() )
object |
A CYT object |
item.use |
character. Items use to 2D plot, axes x and y must be numeric. |
cex.size |
numeric. Size of the dot |
size.by.cell.number |
logical. Whether to show size of cell number. |
main |
character. Title of the plot. |
plot.theme |
themes from |
ggplot2 figure
cyt.file <- system.file("extdata/cyt.rds", package = "CytoTree") cyt <- readRDS(file = cyt.file) # Runs only have more than two stages plotPieCluster(cyt, cex.size = 0.5) plotPieCluster(cyt, item.use = c("PC_1", "PC_2"), cex.size = 0.5) plotPieCluster(cyt, item.use = c("PC_2", "PC_3"), cex.size = 0.5) plotPieCluster(cyt, item.use = c("tSNE_1", "tSNE_2"), cex.size = 20) plotPieCluster(cyt, item.use = c("DC_1", "DC_2"), cex.size = 0.5) plotPieCluster(cyt, item.use = c("UMAP_1", "UMAP_2"), cex.size = 1) plotPieCluster(cyt, item.use = c("UMAP_1", "UMAP_2"), cex.size = 1)