plotPseudotimeDensity {CytoTree}R Documentation

plot Pseudotime density of CYT

Description

plot Pseudotime density of CYT

Usage

plotPseudotimeDensity(
  object,
  color.by = "stage",
  main = "Density of pseudotime",
  adjust = 0.5,
  plot.theme = theme_bw()
)

Arguments

object

a CYT object

color.by

character.

main

character. Title of the plot

adjust

numeric. A multiplicate bandwidth adjustment.

plot.theme

themes from ggplot2

Value

ggplot2 figure

Examples


cyt.file <- system.file("extdata/cyt.rds", package = "CytoTree")
cyt <- readRDS(file = cyt.file)

plotPseudotimeDensity(cyt)

plotPseudotimeDensity(cyt, adjust = 1)
plotPseudotimeDensity(cyt, adjust = 2)




[Package CytoTree version 1.0.3 Index]