plotPseudotimeTraj {CytoTree} | R Documentation |
plotPseudotimeTraj
plotPseudotimeTraj( object, cutoff = -1, markers = NULL, size = 0.5, alpha = 0.6, print.curve = TRUE, var.cols = FALSE, plot.theme = theme_bw() )
object |
A CYT object |
cutoff |
numeric. Cutoff of trajectory value |
markers |
character. Markers used in the calculation progress |
size |
numeric. Size of the dot |
alpha |
numeric. Transparency (0-1) of the dot, default is 1. |
print.curve |
logical. Whether to perform curve fitting |
var.cols |
logical. Whether to plot stage |
plot.theme |
themes from |
ggplot2 figure
cyt.file <- system.file("extdata/cyt.rds", package = "CytoTree") cyt <- readRDS(file = cyt.file) plotPseudotimeTraj(cyt) plotPseudotimeTraj(cyt, print.curve = FALSE) plotPseudotimeTraj(cyt, var.cols = TRUE) plotPseudotimeTraj(cyt, markers = c("CD43", "CD34"))