excludeFromBam {CrispRVariants}R Documentation

Removes reads from a bam file

Description

Returns a GAlignments excluding reads based on either name and/or location

Usage

excludeFromBam(bam, exclude.ranges = GRanges(), exclude.names = NA)

Arguments

bam

a GAlignments object

exclude.ranges

Regions to exclude, as GRanges.

exclude.names

A character vector of alignments names to exclude

Value

The bam minus the excluded regions

Author(s)

Helen Lindsay


[Package CrispRVariants version 1.18.0 Index]