calcCoGAPSStat {CoGAPS} | R Documentation |
calculates a statistic to determine if a pattern is enriched in a a particular set of measurements or samples.
calcCoGAPSStat( object, sets = NULL, whichMatrix = "featureLoadings", numPerm = 1000, ... ) ## S4 method for signature 'CogapsResult' calcCoGAPSStat( object, sets = NULL, whichMatrix = "featureLoadings", numPerm = 1000, ... )
object |
an object of type CogapsResult |
sets |
list of sets of measurements/samples |
whichMatrix |
either "featureLoadings" or "sampleFactors" indicating which matrix to calculate the statistics for |
numPerm |
number of permutations to use when calculatin p-value |
... |
handles old arguments for backwards compatibility |
gene set statistics for each column of A