DA_pairwise {ChromSCape}R Documentation

Run differential analysis in Pairwise mode

Description

Run differential analysis in Pairwise mode

Usage

DA_pairwise(affectation, nclust, counts, method, feature, block)

Arguments

affectation

An annotation data.frame with cell_cluster and cell_id columns

nclust

Number of clusters

counts

Count matrix

method

DA method, Wilcoxon or edgeR

feature

Feature data.frame

block

Blocking feature

Value

A list of results, groups compared and references


[Package ChromSCape version 1.0.0 Index]