call_macs2_merge_peaks {ChromSCape}R Documentation

Calling MACS2 peak caller and merging resulting peaks

Description

Calling MACS2 peak caller and merging resulting peaks

Usage

call_macs2_merge_peaks(affectation, odir, p.value, ref, peak_distance_to_merge)

Arguments

affectation

Annotation data.frame with cell cluster and cell id information

odir

Output directory to write MACS2 output

p.value

P value to detect peaks, passed to MACS2

ref

Reference genome

peak_distance_to_merge

Distance to merge peaks

Value

A list of merged GRanges peaks


[Package ChromSCape version 1.0.0 Index]