warning_raw_counts_to_feature_count_files {ChromSCape} | R Documentation |
Warning for _raw_counts_to_feature_count_files
warning_raw_counts_to_feature_count_files( files_dir, file_type = c("BAM", "BED", "Index_Peak_Barcode"), peak_file = NULL, n_bins = NULL, bin_width = NULL, geneTSS = NULL, aroundTSS = 2500, verbose = TRUE, ref = "hg38" )
files_dir |
The directory containing the files |
file_type |
Input file(s) type(s) ('BAM') |
peak_file |
A file containing genomic location of peaks (NULL) |
n_bins |
The number of bins to tile the genome (NULL) |
bin_width |
The size of bins to tile the genome (NULL) |
geneTSS |
Use geneTSS regions for annotation ? (NULL) |
aroundTSS |
Space up and downstream of TSS to use (2500) |
verbose |
Verbose (TRUE) |
ref |
reference genome to use (hg38) |
Error or warnings if the input are not correct