filter_genes_with_refined_peak_annotation {ChromSCape} | R Documentation |
Filter genes based on peak calling refined annotation
filter_genes_with_refined_peak_annotation( refined_annotation, peak_distance, signific, over, under )
refined_annotation |
A data.frame containing each gene distance to real peak |
peak_distance |
Minimum distance to an existing peak to accept a given gene |
signific |
Indexes of all significantly differential genes |
over |
Indexes of all significantly overexpressed genes |
under |
Indexes of all significantly underexpressed genes |
List of significantly differential, overexpressed and underexpressed genes close enough to existing peaks