define_feature {ChromSCape}R Documentation

Define the features on which reads will be counted

Description

Define the features on which reads will be counted

Usage

define_feature(ref, peak_file, n_bins, bin_width, geneTSS, aroundTSS)

Arguments

ref

Reference genome

peak_file

A bed file if counting on peaks

n_bins

A number of bins if divinding genome into fixed number of bins

bin_width

A number of bins if divinding genome into fixed width bins

geneTSS

A logical indicating if feature should be counted around genes TSS instead

aroundTSS

Region to take in account around genes TSS

Value

A GRanges object


[Package ChromSCape version 1.0.0 Index]