table_enriched_genes_scExp {ChromSCape} | R Documentation |
Creates table of enriched genes sets
table_enriched_genes_scExp( scExp, set = "Both", cell_cluster = "C1", enr_class_sel = c("c1_positional", "c2_curated", "c3_motif", "c4_computational", "c5_GO", "c6_oncogenic", "c7_immunologic", "hallmark") )
scExp |
A SingleCellExperiment object containing list of enriched gene sets. |
set |
A character vector, either 'Both', 'Overexpressed' or 'Underexpressed'. ('Both') |
cell_cluster |
Cell cluster. ('C1') |
enr_class_sel |
Which classes of gene sets to show. (c('c1_positional', 'c2_curated', ...)) |
A DT::data.table of enriched gene sets.
data("scExp") ## Not run: table_enriched_genes_scExp(scExp)