run_pairwise_tests {ChromSCape}R Documentation

Run pairwise tests

Description

Run pairwise tests

Usage

run_pairwise_tests(affectation, nclust, counts, feature, method)

Arguments

affectation

An annotation data.frame with cell_cluster and cell_id columins

nclust

Number of clusters

counts

Count matrix

feature

Feature data.frame

method

DA method, Wilcoxon or edgeR

Value

A list containing objects for DA function


[Package ChromSCape version 1.0.0 Index]