DA_one_vs_rest_fun {ChromSCape}R Documentation

Differential Analysis in 'One vs Rest' mode

Description

Differential Analysis in 'One vs Rest' mode

Usage

DA_one_vs_rest_fun(affectation, nclust, counts, method, feature, block)

Arguments

affectation

An annotation data.frame with cell_id and cell_cluster columns

nclust

Number of clusters

counts

Count matrix

method

DA method : Wilcoxon or EdgeR

feature

Feature tables

block

Blocking feature

Value

A list of results, groups compared and references


[Package ChromSCape version 1.0.0 Index]