index_peaks_barcodes_to_matrix_indexes {ChromSCape} | R Documentation |
Read index-peaks-barcodes trio files on interval to create count indexes
index_peaks_barcodes_to_matrix_indexes( peak_file, index_file, name_cells, binarize = FALSE, ref = "hg38" )
peak_file |
A file containing the peak genomic locations |
index_file |
A file containing the indexes of non-zeroes values and their value (respectively i,j,x,see sparseMatrix) |
name_cells |
A vector with cell names |
binarize |
Binarize matrix ? |
ref |
Reference genome |
A list containing a "feature index" data.frame and a region GenomicRange object both used to form the sparse matrix