DA_pairwise {ChromSCape} | R Documentation |
Run differential analysis in Pairwise mode
DA_pairwise(affectation, nclust, counts, method, feature, block)
affectation |
An annotation data.frame with cell_cluster and cell_id columns |
nclust |
Number of clusters |
counts |
Count matrix |
method |
DA method, Wilcoxon or edgeR |
feature |
Feature data.frame |
block |
Blocking feature |
A list of results, groups compared and references