choose_perplexity {ChromSCape}R Documentation

Choose perplexity depending on number of cells for Tsne

Description

Choose perplexity depending on number of cells for Tsne

Usage

choose_perplexity(dataset)

Arguments

dataset

A matrix of features x cells (rows x columns)

Value

A number between 5 and 30 to use in Rtsne function


[Package ChromSCape version 1.0.0 Index]