define_feature {ChromSCape} | R Documentation |
Define the features on which reads will be counted
define_feature(ref, peak_file, n_bins, bin_width, geneTSS, aroundTSS)
ref |
Reference genome |
peak_file |
A bed file if counting on peaks |
n_bins |
A number of bins if divinding genome into fixed number of bins |
bin_width |
A number of bins if divinding genome into fixed width bins |
geneTSS |
A logical indicating if feature should be counted around genes TSS instead |
aroundTSS |
Region to take in account around genes TSS |
A GRanges object