call_macs2_merge_peaks {ChromSCape} | R Documentation |
Calling MACS2 peak caller and merging resulting peaks
call_macs2_merge_peaks(affectation, odir, p.value, ref, peak_distance_to_merge)
affectation |
Annotation data.frame with cell cluster and cell id information |
odir |
Output directory to write MACS2 output |
p.value |
P value to detect peaks, passed to MACS2 |
ref |
Reference genome |
peak_distance_to_merge |
Distance to merge peaks |
A list of merged GRanges peaks