results_enrichmentTest {ChromSCape} | R Documentation |
Run hypergeometric enrichment test and combine significant pathways into a data.frame
results_enrichmentTest( differentialGenes, enrichment_qval, GeneSets, GeneSetsDf, GenePool )
differentialGenes |
Genes significantly over / under expressed |
enrichment_qval |
Adusted p-value threshold above which a pathway is considered significative |
GeneSets |
List of pathways |
GeneSetsDf |
Data.frame of pathways |
GenePool |
Pool of possible genes for testing |
A data.frame with pathways passing q.value threshold