estLibSize {ChIPpeakAnno} | R Documentation |
estimate the library size of bam files
estLibSize(bamfiles, index = bamfiles, ...)
bamfiles |
The file names of the 'BAM' ('SAM' for asBam) files to be processed. |
index |
The names of the index file of the 'BAM' file being processed; this is given without the '.bai' extension. |
... |
Not used. |
numberic vector
Jianhong Ou
if(interactive() || Sys.getenv("USER")=="jianhongou"){ path <- system.file("extdata", "reads", package="MMDiffBamSubset") if(file.exists(path)){ WT.AB2 <- file.path(path, "WT_2.bam") Null.AB2 <- file.path(path, "Null_2.bam") Resc.AB2 <- file.path(path, "Resc_2.bam") estLibSize(c(WT.AB2, Null.AB2, Resc.AB2)) } }