getLoadedData {ChIPSeqSpike} | R Documentation |
Accesses and returns the binding scores of an experiment or input DNA experiment on the endogenous reference genome. (only available in boost mode).
getLoadedData(theObject) ## S4 method for signature 'ChIPSeqSpikeDatasetBoost' getLoadedData(theObject) ## S4 method for signature 'ExperimentLoaded' getLoadedData(theObject)
theObject |
A |
If the object is ChIPSeqSpikeDatasetBoost, getLoadedData returns a GRanges object of binding scores of the input DNA experiment.
If the object is ExperimentLoaded, getLoadedData returns a GRanges object of binding scores of the experiment.
A GRanges object of binding scores
Nicolas Descostes
file_vec <- system.file("extdata", c("bam_files/H3K79me2_0_dm3-filtered.bam", "bam_files/H3K79me2_0_hg19-filtered.bam", "bigwig_files/H3K79me2_0-filtered.bw", "bigwig_files/input_0-filtered.bw", "bam_files/input_0_hg19-filtered.bam"), package="ChIPSeqSpike") if(.Platform$OS.type != 'windows') { csds <- ChIPSeqSpikeDatasetBoost(endogenousBam_vec = file_vec[2], exogenousBam_vec = file_vec[1], bigWigFile_endogenous_vec = file_vec[3], inputBigWigFile = file_vec[4], inputBamFile = file_vec[5], expnames = "H3K79me2_0") getLoadedData(csds) }