.plotManifold_def {CellTrails} | R Documentation |
Plots approximation of sample embedding in latent space in two dimensions
.plotManifold_def( X, y, name, g = NULL, weights = NULL, axis_label = "", colors = c("pretty", "bw"), type = c("raw", "surface.fit", "surface.se"), samples_only = FALSE, setND = FALSE, alpha = 0.1 )
X |
Ordination of data points |
y |
Values to visualize |
name |
Label for the figure legend |
g |
The trajectory graph |
weights |
States along the trajectory |
axis_label |
Label prefix for each axis |
colors |
Either the color ramp is colorized or black/white |
type |
Type of visualization |
samples_only |
Does not show the whole surface, but colorizes only the samples |
setND |
Indicates if a '0' value should be set to 'ND' in the figure legend |
alpha |
Color param |
A ggplot
object
Daniel C. Ellwanger