.findStates_def {CellTrails} | R Documentation |
For details see findStates
.findStates_def( X, ordi, link.method = "ward.D2", min.size, max.pval = 1e-04, min.fc = 2, min.g = 5, reverse = FALSE, verbose = FALSE )
X |
Expression matrix |
ordi |
Ordination of samples |
link.method |
Linkage criteria |
min.size |
Min size of inital clusters |
max.pval |
Pval threshold |
min.fc |
Fold-change threshold |
reverse |
Reverse order |
verbose |
For debug |
ming.g |
Feature cound threshold |
Daniel C. Ellwanger