latentSpace {CellTrails}R Documentation

GET CellTrails' latent space

Description

Retrieve computed latent space from a SingleCellExperiment object.

Usage

latentSpace(object)

Arguments

object

A SingleCellExperiment object

Details

Returns the latent space set for a CellTrails analysis. The resulting matrix is numeric. Rows are samples and columns are d components. It is a wrapper for reducedDim to ensure that the proper matrix is received from a SingleCellExperiment object.

Value

An object of class matrix

Author(s)

Daniel C. Ellwanger

See Also

SingleCellExperiment reducedDim

Examples

# Example data
data(exSCE)

# Get latent space
latentSpace(exSCE)[seq_len(5), ]

[Package CellTrails version 1.8.0 Index]