plotTrail {CellTrails}R Documentation

Visualize single trails

Description

Method highlights a single trail on the trajectory map

Usage

plotTrail(sce, name)

Arguments

sce

A SingleCellExperiment object

name

Name of the trail

Details

A trail can be defined with the function addTrail between two landmarks. User-defined landmarks can be set with the function userLandmarks. This function visualizes the start and endpoints, and the pseudotime of a defined trail along the trajectory. The trail pseudotimes can be directly accessed via the trails.

An error is thrown if the trail_name is unknown. The function is case-sensitiv. All available trails can be listed by trailNames.

Value

A ggplot object

Author(s)

Daniel C. Ellwanger

See Also

addTrail userLandmarks trailNames trails

Examples

# Example data
data(exSCE)

# Plot trail
plotTrail(exSCE, name="Tr1")

[Package CellTrails version 1.8.0 Index]