ReplicateManuscript {CellMapper} | R Documentation |
Recreates the CellMapper predictions from Nelms, et al. (2016) – Additional dataset 1.
ReplicateManuscript()
This function will recreate the CellMapper predictions from Nelms, et al.
(2016), Additional dataset 1. It requires the ExperimentHub
and
CellMapperData
packages to be installed. Provided that the
CellMapperData
resources have previously been downloaded from
ExperimentHub
, the 'ReplicateManuscript' function should take ~5 minutes
to run on a personal laptop.
A 'list' object containing CellMapper predictions for each cell type. Genes names are returned as Entrez identifiers.
Brad Nelms
B.D. Nelms, L. Waldron, L.A. Barrera, A.W. Weflen, J.A. Goettel, G. Guo, R.K. Montgomery, M.R. Neutra, D.T. Breault, S.B. Snapper, S.H. Orkin, M.L. Bulyk, C. Huttenhower and W.I. Lencer. CellMapper: rapid and accurate inference of gene expression in difficult-to-isolate cell types. Genome Biology 2016, 17(1).
CMsearch
, ExampleQueryGenes
,
CellMapperData
,
ExperimentHub
Results <- ReplicateManuscript() head(Results[['GABAergic Neurons']])