GetRegulatedNodes {CausalR} | R Documentation |
This function will compute the nodes regulated by the given hypothesis gene and write the results to a file
GetRegulatedNodes(PPInet, Expressiondata, delta, hypothesisGene = "", signOfHypothesis = 1, outputfile = "")
PPInet |
a protein-protein interaction network |
Expressiondata |
a table of observed gene expression data |
delta |
the number of edges to follow along the network. This should typically be between 1 and 5 dependent on network size/topology |
hypothesisGene |
the name of the hypothesis gene |
signOfHypothesis |
the sign of action expected from the hypothesis, +1 for up regulation, -1 for down |
outputfile |
the file to which the results should be written |
Nodes regulated by hypothesis gene