CRImage-package {CRImage} | R Documentation |
CRImage allows classification of cells in biological images. It offers methods to segment cells or cell nuclei in biological images for example HE stained images. It offers methods to create a classifier and to classify cells in these images. Furthermore it allows the calculation of tumour cellularity for large microscope images.
CRImage makes use of the image processing package EBImage, which uses the 'ImageMagick' library for image I/O operations and the 'GTK' library to display images.
Package: | CRImage |
Type: | Package |
Version: | 1.0 |
Date: | 2010-04-27 |
License: | LGPL Version 2 or later |
LazyLoad: | yes |
Image processing methods:
calculateThreshold
segmentImage
Classification:
createTrainingSet
createClassifier
classifyCells
Tumour cellularity
calculateCellularity
processAperio
Henrik Failmezger, <failmezger@mpipz.mpg.de>
Yinyin Yuan, <Yinyin.Yuan@cancer.org.uk>
Oscar Rueda, <oscar.rueda@cancer.org.uk>
Florian Markowetz, <florian.markowetz@cancer.org.uk>
CRI Cambridge
Li Ka Shing Centre
Robinson Way
Cambridge, CB2 0RE, UK
Ludwigs-Maximilians University of Munich
example(segmentImage) example(createClassifier) example(classifyImage)