shinyCOMPASS {COMPASS} | R Documentation |
This function takes a COMPASSResult
object, and generates
a local Shiny application for visualizing the results.
shinyCOMPASS(x, dir = NULL, meta.vars, facet1 = "None", facet2 = "None", facet3 = "None", main = "Heatmap of Ag-Specificity Posterior Probabilities", stimulation = NULL, launch = TRUE, ...)
x |
An object of class |
dir |
A location to write out the |
meta.vars |
A character vector of column names that should be used for potential facetting in the Shiny app. By default, we take all metadata variables; you may want to limit this if you know certain variables are not of interest. |
facet1, facet2, facet3 |
Default values for facets in the Shiny app. Each should be the name of a single vector in the metadata. |
main |
A title to give to the heatmap and subset histogram plots. |
stimulation |
The name of the stimulation applied. If this is |
launch |
Boolean; if |
... |
Optional arguments passed to |
shinyCOMPASSDeps
, for identifying packages that you
need in order to run the Shiny application.
if (interactive()) { oldOpt <- getOption("example.ask") options(example.ask=FALSE) on.exit( options(example.ask=oldOpt) ) shinyCOMPASS(CR) options(example.ask=TRUE) }