CorrelateReference {CHETAH} | R Documentation |
Correlate all reference profiles to each other using differentially expressed genes.
CorrelateReference(ref_cells = NULL, ref_profiles = NULL, ref_ct = "celltypes", ref_c = NA, return = FALSE, n_genes = 200, fix_ngenes = TRUE, print_steps = FALSE, only_pos = FALSE)
ref_cells |
the reference, similar to
|
ref_profiles |
similar to
|
ref_ct |
the colData of |
ref_c |
the assay of |
return |
return the matrix that was used to produce the plot |
n_genes |
as in |
fix_ngenes |
as in |
print_steps |
as in |
only_pos |
as in |
A square plot. The values show how much two reference profiles correlate, when using the genes with the highest fold-change.
CorrelateReference(ref_cells = headneck_ref)