plot_profile {CEMiTool} | R Documentation |
Creates a plot with module gene expression profiles along samples
plot_profile(cem, ...) ## S4 method for signature 'CEMiTool' plot_profile(cem, order_by_class = TRUE, center_func = "mean")
cem |
Object of class |
... |
Optional parameters. |
order_by_class |
Logical. Only used if a sample
annotation file is present. Whether or not to order by the
class column in the sample annotation file (as defined by the
class_column slot in |
center_func |
Character string indicating the centrality measure to show in the plot. Either 'mean' (the default) or 'median'. |
Object of class CEMiTool
with profile plots
# Get example CEMiTool object data(cem) # Plot module gene expression profiles cem <- plot_profile(cem) # Check resulting plot show_plot(cem, "profile")