get_adj {CEMiTool} | R Documentation |
This function takes a CEMiTool
object
and returns an adjacency matrix.
get_adj(cem, ...) ## S4 method for signature 'CEMiTool' get_adj( cem, beta, network_type = "unsigned", cor_function = "cor", cor_method = "pearson" )
cem |
Object of class |
... |
Optional parameters. |
beta |
Selected soft-threshold value |
network_type |
A character string indicating to use either "unsigned"
(default) or "signed" networks. Default |
cor_function |
A character string indicating the correlation function
to be used. Default |
cor_method |
A character string indicating which correlation
coefficient is to be computed. Default |
Object of class CEMiTool
with adjacency data
# Get example expression data data(expr0) # Initialize new CEMiTool object with expression data cem <- new_cem(expr0, filter=TRUE, apply_vst=FALSE) # Calculate adjacency matrix with example beta value 8 cem <- get_adj(cem, beta=8) # Check results adj <- adj_data(cem) adj[1:5, 1:5]