extractExpressionClass {CAGEr} | R Documentation |
Extracts CTSSs or consensus clusters belonging to a specified expression class.
extractExpressionClass(object, what, which = "all") ## S4 method for signature 'CAGEexp' extractExpressionClass(object, what, which = "all") ## S4 method for signature 'CAGEset' extractExpressionClass(object, what, which = "all")
object |
A |
what |
Which level of expression clustering should be used. Can be either
|
which |
Which expression class should be extracted. It has to be one of the valid
expression class labels (as returned by |
Returns a data.frame
of CTSSs (when what = "CTSS"
) or consensus clusters
(when what = "consensusClusters"
) belonging to a specified expression class, with
genomic coordinates and additional information. Last column contains the label of the
corresponding expression class.
Vanja Haberle
getExpressionProfiles
, plotExpressionProfiles
,
expressionClasses
.
CTSSexprClasses <- extractExpressionClass(exampleCAGEset, what = "CTSS", which = "all") head(CTSSexprClasses)