consensusClusterConvertors {CAGEr}R Documentation

Private functions to convert CC formats

Description

Interconvert consensus clusters (CC) formats used in classes CAGEset (data.frame) and CAGEexp (GRanges).

Usage

CCgranges2dataframe(gr)

CCdataframe2granges(df)

Arguments

gr

Consensus clusters in GRanges format.

df

Consensus clusters in data.frame format.

See Also

Other df2granges converters: tagClusterConvertors

Examples

df <- consensusClusters(exampleCAGEset)
head(df)
gr <- CCdataframe2granges(df)
gr
# No round-trip because start and end were not integer in df.
# identical(df, CCgranges2dataframe(gr))

[Package CAGEr version 1.32.1 Index]