facetPlot {CAFE} | R Documentation |
Plots all chromosomes in horizontal alignment next to each other, with optionally a moving average smoother applied to the data
facetPlot(datalist,samples=c(1,2),slid=FALSE,combine=FALSE,k=1,file="default")
datalist |
The CAFE datalist to be analyzed, i.e. the output of |
samples |
A vector or sample numbers to be plotted |
slid |
If |
combine |
If |
k |
The sliding window size. Must be a positive integer, smaller than the length of Affy IDs on the chromosome |
file |
Specify a file name to store output png file |
Plot to file system. Return a ggplot2 graph
Makes heavy use of the ggplot2 package
Sander Bollen
H. Wickham. ggplot2: elegant graphics for data analysis. Springer New York, 2009.
data("CAFE_data") facetPlot(CAFE_data,samples=9)