covFile {BUMHMM} | R Documentation |
A matrix containing 1800x6 entries of per nucleotide coverage information from structure probing experiments.
This matrix is provided as a reference for creating a
SummarizedExperiment
object for storing all structure probing data
used by the BUMHMM
package. See se
for the
example code.
covFile
A matrix containing the coverage information for each nucleotide position of a ribosomal RNA 18S obtained in a structure probing experiment using DMS as a probe, where:
control experimental replicate
control experimental replicate
control experimental replicate
treatment experimental replicate
treatment experimental replicate
treatment experimental replicate
Coverage information per nucleotide.
Hector, R. D. et al. "Snapshots of pre-rRNA structural flexibility reveal eukaryotic 40S assembly dynamics at nucleotide resolution." Nucleic acids research (2014).