boxplot_cluster_expr {BPRMeth} | R Documentation |
Create a boxplot of clustered gene expression levels which depend on the clustered methylation profiles. Each colour denotes a different cluster.
boxplot_cluster_expr(cluster_obj, expr, anno, title = "Expression levels")
cluster_obj |
The output from |
expr |
The expression data object. |
anno |
The annotation data object. |
title |
Plot title |
A ggplot2 object.
C.A.Kapourani C.A.Kapourani@ed.ac.uk
plot_cluster_profiles
,
plot_infer_profiles
, plot_predicted_expr
# Cluster methylation profiles using 3 RBFs basis <- create_rbf_object(M = 3) # Perform clustering cl_obj <- cluster_profiles_vb(X = encode_met$met, K = 3, model = "binomial", basis = basis, vb_max_iter = 5) # Create plot g <- boxplot_cluster_expr(cluster_obj = cl_obj, expr = encode_expr, anno = encode_met$anno)