BASiCS_LoadChain {BASiCS}R Documentation

Loads pre-computed MCMC chains generated by the BASiCS_MCMC function

Description

Loads pre-computed MCMC chains generated by the BASiCS_MCMC function, creating a BASiCS_Chain object

Usage

BASiCS_LoadChain(RunName = "", StoreDir = getwd(), StoreUpdatedChain = FALSE)

Arguments

RunName

String used to index '.Rds' file containing the MCMC chain (produced by the BASiCS_MCMC function, with StoreChains = TRUE)

StoreDir

Directory where '.Rds' file is stored. Default: StoreDir = getwd()

StoreUpdatedChain

Only required when the input files contain an outdated version of a BASiCS_Chain object. If StoreUpdatedChain = TRUE, an updated object is saved (this overwrites original input file, if it was an '.Rds' file).

Value

An object of class BASiCS_Chain.

Author(s)

Catalina A. Vallejos cnvallej@uc.cl

Nils Eling eling@ebi.ac.uk

See Also

BASiCS_Chain

Examples


Data <- makeExampleBASiCS_Data()
Chain <- BASiCS_MCMC(
  Data,
  N = 50,
  Thin = 5,
  Burn = 5,
  Regression = FALSE,
  StoreChains = TRUE,
  StoreDir = tempdir(),
  RunName = "Test"
)
ChainLoad <- BASiCS_LoadChain(RunName = "Test", StoreDir = tempdir())

[Package BASiCS version 2.2.4 Index]