nmr_baseline_removal {AlpsNMR} | R Documentation |
Removes the baseline on an nmr_dataset_1D object, using baseline::baseline.als.
nmr_baseline_removal(nmr_dataset, lambda = 6, p = 0.05, maxit = 20)
nmr_dataset |
An nmr_dataset_1D. |
lambda |
2nd derivative constraint |
p |
Weighting of positive residuals |
maxit |
Maximum number of iterations |
The same nmr_dataset_1D object after baseline removal.
Other nmr_dataset_1D functions:
[.nmr_dataset_1D()
,
computes_peak_width_ppm()
,
file_lister()
,
files_to_rDolphin()
,
format.nmr_dataset_1D()
,
is.nmr_dataset_1D()
,
load_and_save_functions
,
new_nmr_dataset_1D()
,
nmr_align_find_ref()
,
nmr_baseline_threshold()
,
nmr_exclude_region()
,
nmr_integrate_regions()
,
nmr_interpolate_1D()
,
nmr_meta_add()
,
nmr_meta_export()
,
nmr_meta_get_column()
,
nmr_meta_get()
,
nmr_normalize()
,
nmr_pca_build_model()
,
nmr_pca_outliers_filter()
,
nmr_pca_outliers_plot()
,
nmr_pca_outliers_robust()
,
nmr_pca_outliers()
,
nmr_ppm_resolution()
,
plot.nmr_dataset_1D()
,
plot_webgl()
,
print.nmr_dataset_1D()
,
rdCV_PLS_RF_ML()
,
rdCV_PLS_RF()
,
save_files_to_rDolphin()
,
to_ChemoSpec()
,
validate_nmr_dataset_peak_table()
,
validate_nmr_dataset()
dir_to_demo_dataset <- system.file("dataset-demo", package = "AlpsNMR") dataset <- nmr_read_samples_dir(dir_to_demo_dataset) dataset_1D <- nmr_interpolate_1D(dataset, axis = c(min = -0.5, max = 10, by = 2.3E-4)) dataset_no_base_line <- nmr_baseline_removal(dataset_1D, lambda = 6, p = 0.01)