rc.meth.lvl {AlphaBeta}R Documentation

Calculating rc.Meth.lvl

Description

Estimating epimutation rates from high-throughput DNA methylation data

Usage

rc.meth.lvl(nodelist, cytosine, posteriorMaxFilter)

Arguments

nodelist

List of samples, you can find sample file in "extdata" called "nodelist.fn"

cytosine

Type of cytosine (CHH/CHG/CG)

posteriorMaxFilter

Filter value, based on posteriorMax

Value

rc meth lvl.

Examples

## Get some toy data
file <- system.file("extdata/dm/","tmp_nodelist.fn", package="AlphaBeta")
rc.meth.lvl(file, "CG", 0.99)

[Package AlphaBeta version 1.4.0 Index]