minCountFilt {AllelicImbalance} | R Documentation |
filter on minCountFilt snps
minCountFilt(x, ...) ## S4 method for signature 'ASEset' minCountFilt( x, strand = "*", threshold.counts = 1, sum = "all", replace.with = "zero", return.class = "ASEset" )
x |
|
... |
internal param |
strand |
strand to infer from |
threshold.counts |
cutoff for read counts (see details) |
sum |
'each' or 'all' |
replace.with |
only option 'zero' |
return.class |
'ASEset', 'array' or 'matrix' |
Description info here
Jesper R. Gadin, Lasse Folkersen
#load example data data(ASEset) a <- ASEset minCountFilt(a)