esetMicroRna {AgiMicroRna}R Documentation

ExpressionSet object from a uRNAList

Description

It creates an 'ExpressionSet' object from a 'uRNAList' with unique probe names Tipically, the 'uRNAList object' contains the Total Gene Processed data

Usage

esetMicroRna(uRNAList, targets, makePLOT=FALSE,verbose=FALSE)

Arguments

uRNAList

An uRNAList containing normally the processed data

targets

data.frame with the targets structure

makePLOT

logical, if TRUE it makes a 'heatmap' with the 100 greater variance genes, a 'hierarchical cluster' with all the genes and a pca plot

verbose

logical, if TRUE prints out output

Details

It creates an ExpressionSet object from a uRNAList. Usually this function is applied to an uRNAList object containing the Total Gene Processed data.

Value

An ExpressionSet object

Author(s)

Pedro Lopez-Romero

See Also

An 'uRNAList' example containing proccesed data is in ddPROC and an overview of how the processed data is produced is given in filterMicroRna


[Package AgiMicroRna version 2.40.0 Index]