hierclusMicroRna {AgiMicroRna} | R Documentation |
Hierarchical cluster of samples using the 'hclust' function
hierclusMicroRna(object, GErep, methdis, methclu,sel, size)
object |
An expression Matrix |
GErep |
Numerical vector that relates each sample with its experimental condition |
methdis |
the distance measure to be used. Options are 'euclidean' and 'pearson'. see 'dist' function |
methclu |
the agglomeration method to be used by the 'hclust' function |
sel |
logical, if |
size |
selects the 'size' highest variance genes for the plot if 'sel=TRUE' |
Pedro Lopez-Romero
hclust,dist
data(targets.micro) data(ddPROC) hierclusMicroRna(ddPROC$TGS,GErep, methdis="euclidean", methclu="complete", sel=FALSE,100)