NormalizeRPM {ADImpute}R Documentation

RPM normalization

Description

NormalizeRPM performs RPM normalization, with possibility to log the result

Usage

NormalizeRPM(data, sce = NULL, log = FALSE, scale = 1,
pseudo.count = 1)

Arguments

data

matrix; raw data (genes as rows and samples as columns)

sce

SingleCellExperiment; raw data

log

logical; log RPMs?

scale

integer; scale factor to divide RPMs by

pseudo.count

numeric; if log = TRUE, value to add to RPMs in order to avoid taking log(0)

Value

matrix; library size normalized data

Examples

demo <- NormalizeRPM(ADImpute::demo_data)


[Package ADImpute version 1.0.0 Index]