Visualization of Functional Enrichment Result

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Documentation for package ‘enrichplot’ version 1.10.2

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barplot.enrichResult barplot
cnetplot cnetplot
cnetplot-method cnetplot
cnetplot.enrichResult cnetplot
color_palette color_palette
dotplot dotplot
dotplot-method dotplot
dotplot-method dotplot
emapplot emapplot
emapplot-method emapplot
emapplot.compareClusterResult emapplot
emapplot.enrichResult emapplot
emapplot_cluster emapplot_cluster
emapplot_cluster-method emapplot_cluster
emapplot_cluster.compareClusterResult emapplot_cluster
emapplot_cluster.enrichResult emapplot_cluster
fortify.compareClusterResult fortify
fortify.enrichResult fortify
get_igraph Get an iGraph object
get_w A function for get sel_w and net_w
ggtable ggtable
goplot goplot
goplot-method goplot
goplot.enrichResult goplot
gseadist gseadist
gseaplot gseaplot
gseaplot-method gseaplot
gseaplot.gseaResult gseaplot
gseaplot2 gseaplot2
gsearank gsearank
gsInfo gsInfo
has_pairsim Check whether the similarity matrix exists
heatplot heatplot
heatplot-method heatplot
heatplot.enrichResult heatplot
list2graph convert gene IDs to igraph object
pairwise_termsim pairwise_termsim
pairwise_termsim-method pairwise_termsim
pairwise_termsim.compareClusterResult pairwise_termsim
pairwise_termsim.enrichResult pairwise_termsim
plotting.clusterProfile plotting-clusterProfile
pmcplot pmcplot
ridgeplot ridgeplot
ridgeplot-method ridgeplot
ridgeplot.gseaResult ridgeplot
upsetplot upsetplot method
upsetplot,gseaResult upsetplot method
upsetplot-method upsetplot method
wordcloud_i Get cluster labels