davidTiling

DOI: 10.18129/B9.bioc.davidTiling    

Data and analysis scripts for David, Huber et al. yeast tiling array paper

Bioconductor version: Release (3.11)

This package contains the data for the paper by L. David et al. in PNAS 2006 (PMID 16569694): 8 CEL files of Affymetrix genechips, an ExpressionSet object with the raw feature data, a probe annotation data structure for the chip and the yeast genome annotation (GFF file) that was used. In addition, some custom-written analysis functions are provided, as well as R scripts in the scripts directory.

Author: Wolfgang Huber <huber at ebi.ac.uk>, Joern Toedling <toedling at ebi.ac.uk>

Maintainer: Wolfgang Huber <huber at ebi.ac.uk>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("davidTiling")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	ExperimentData, Genome, MicroarrayData, ReproducibleResearch, Saccharomyces_cerevisiae_Data
Version	1.28.0
License	LGPL
Depends	R (>= 2.10), Biobase(>= 2.5.5), tilingArray, GO.db
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL	http://www.ebi.ac.uk/huber
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	davidTiling_1.28.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/davidTiling
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/davidTiling
Package Short Url	https://bioconductor.org/packages/davidTiling/
Package Downloads Report	Download Stats