Bioconductor version: Release (3.11)
Framework for processing and visualization of chromatographically separated and single-spectra mass spectral data. Imports from AIA/ANDI NetCDF, mzXML, mzData and mzML files. Preprocesses data for high-throughput, untargeted analyte profiling.
Author: Colin A. Smith <csmith at scripps.edu>, Ralf Tautenhahn <rtautenh at gmail.com>, Steffen Neumann <sneumann at ipb-halle.de>, Paul Benton <hpbenton at scripps.edu>, Christopher Conley <cjconley at ucdavis.edu>, Johannes Rainer <Johannes.Rainer at eurac.edu>, Michael Witting <michael.witting at helmholtz-muenchen.de>
Maintainer: Steffen Neumann <sneumann at ipb-halle.de>
Citation (from within R,
enter citation("xcms")
):
To install this package, start R (version "4.0") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("xcms")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("xcms")
HTML | R Script | Grouping FTICR-MS data with xcms |
HTML | R Script | LC-MS/MS data analysis with xcms |
HTML | R Script | LCMS data preprocessing and analysis with xcms |
Reference Manual | ||
Text | NEWS | |
Text | LICENSE |
Follow Installation instructions to use this package in your R session.
Source Package | xcms_3.10.2.tar.gz |
Windows Binary | xcms_3.10.2.zip (32- & 64-bit) |
macOS 10.13 (High Sierra) | |
Source Repository | git clone https://git.bioconductor.org/packages/xcms |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/xcms |
Package Short Url | https://bioconductor.org/packages/xcms/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.11 | Source Archive |
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