This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see triform.
Bioconductor version: Release (3.11)
The Triform algorithm uses model-free statistics to identify peak-like distributions of TF ChIP sequencing reads, taking advantage of an improved peak definition in combination with known profile characteristics.
Author: Karl Kornacker Developer [aut], Tony Handstad Developer [aut, cre]
Maintainer: Thomas Carroll <tc.infomatics at gmail.com>
Citation (from within R,
enter citation("triform")
):
To install this package, start R (version "4.0") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("triform")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("triform")
R Script | Triform users guide | |
Reference Manual |
biocViews | ChIPSeq, Sequencing, Software |
Version | 1.29.0 |
In Bioconductor since | BioC 2.11 (R-2.15) (8 years) |
License | GPL-2 |
Depends | R (>= 2.11.0), IRanges, yaml |
Imports | BiocGenerics, IRanges(>= 2.5.27), yaml |
LinkingTo | |
Suggests | RUnit |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | triform_1.29.0.tar.gz |
Windows Binary | |
macOS 10.13 (High Sierra) | |
Source Repository | git clone https://git.bioconductor.org/packages/triform |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/triform |
Package Short Url | https://bioconductor.org/packages/triform/ |
Package Downloads Report | Download Stats |
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