spotSegmentation

DOI: 10.18129/B9.bioc.spotSegmentation    

Microarray Spot Segmentation and Gridding for Blocks of Microarray Spots

Bioconductor version: Release (3.11)

Spot segmentation via model-based clustering and gridding for blocks within microarray slides, as described in Li et al, Robust Model-Based Segmentation of Microarray Images, Technical Report no. 473, Department of Statistics, University of Washington.

Author: Qunhua Li, Chris Fraley, Adrian Raftery Department of Statistics, University of Washington

Maintainer: Chris Fraley <fraley at stat.washington.edu>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("spotSegmentation")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	Microarray, Preprocessing, QualityControl, Software, TwoChannel
Version	1.61.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 15.5 years)
License	GPL (>= 2)
Depends	R (>= 2.10), mclust
Imports
LinkingTo
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URL	http://www.stat.washington.edu/fraley
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	spotSegmentation_1.61.0.tar.gz
Windows Binary	spotSegmentation_1.61.0.zip
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/spotSegmentation
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/spotSegmentation
Package Short Url	https://bioconductor.org/packages/spotSegmentation/
Package Downloads Report	Download Stats