Bioconductor version: Release (3.11)
seqsetvis enables the visualization and analysis of multiple genomic samples. Although seqsetvis was designed for the comparison of mulitple ChIP-seq samples, this package is domain-agnostic and allows the processing of multiple genomic coordinate files (bed-like files) and signal files (bigwig files or bam pileups).
Author: Joseph R Boyd [aut, cre]
Maintainer: Joseph R Boyd <jrboyd at uvm.edu>
Citation (from within R,
enter citation("seqsetvis")
):
To install this package, start R (version "4.0") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("seqsetvis")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("seqsetvis")
HTML | R Script | Overview and Use Cases |
Reference Manual | ||
Text | NEWS | |
Text | LICENSE |
biocViews | ChIPSeq, MultipleComparison, Sequencing, Software, Visualization |
Version | 1.8.0 |
In Bioconductor since | BioC 3.7 (R-3.5) (2.5 years) |
License | MIT + file LICENSE |
Depends | R (>= 3.5), ggplot2 |
Imports | data.table, eulerr, GenomeInfoDb, GenomicAlignments, GenomicRanges, grDevices, grid, IRanges, limma, methods, parallel, pbapply, png, RColorBrewer, Rsamtools, rtracklayer, S4Vectors, stats |
LinkingTo | |
Suggests | BiocFileCache, BiocManager, BiocStyle, ChIPpeakAnno, covr, cowplot, knitr, rmarkdown, testthat |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | seqsetvis_1.8.0.tar.gz |
Windows Binary | seqsetvis_1.8.0.zip |
macOS 10.13 (High Sierra) | seqsetvis_1.8.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/seqsetvis |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/seqsetvis |
Package Short Url | https://bioconductor.org/packages/seqsetvis/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.11 | Source Archive |
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