proteoQC

DOI: 10.18129/B9.bioc.proteoQC    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see proteoQC.

An R package for proteomics data quality control

Bioconductor version: Release (3.11)

This package creates an HTML format QC report for MS/MS-based proteomics data. The report is intended to allow the user to quickly assess the quality of proteomics data.

Author: Bo Wen <wenbo at genomics.cn>, Laurent Gatto <lg390 at cam.ac.uk>

Maintainer: Bo Wen <wenbo at genomics.cn>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("proteoQC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	ImmunoOncology, MassSpectrometry, Proteomics, QualityControl, ReportWriting, Software, Visualization
Version	1.24.0
In Bioconductor since	BioC 3.0 (R-3.1) (6 years)
License	LGPL-2
Depends	R (>= 3.0.0), XML, VennDiagram, MSnbase
Imports	rTANDEM, plyr, seqinr, Nozzle.R1, ggplot2, reshape2, parallel, rpx, tidyr, dplyr, plotly, rmarkdown
LinkingTo
Suggests	RforProteomics, knitr, BiocStyle, R.utils, RUnit, BiocGenerics
SystemRequirements
Enhances
URL	https://github.com/wenbostar/proteoQC
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/proteoQC
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/proteoQC
Package Short Url	https://bioconductor.org/packages/proteoQC/
Package Downloads Report	Download Stats