ccmap

DOI: 10.18129/B9.bioc.ccmap    

Combination Connectivity Mapping

Bioconductor version: Release (3.11)

Finds drugs and drug combinations that are predicted to reverse or mimic gene expression signatures. These drugs might reverse diseases or mimic healthy lifestyles.

Author: Alex Pickering

Maintainer: Alex Pickering <alexvpickering at gmail.com>

Citation (from within R, enter citation("ccmap")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ccmap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ccmap")

 

HTML R Script ccmap vignette
PDF   Reference Manual
Text   LICENSE

Details

biocViews DifferentialExpression, GeneExpression, Microarray, Software, Transcription
Version 1.14.0
In Bioconductor since BioC 3.4 (R-3.3) (4 years)
License MIT + file LICENSE
Depends
Imports AnnotationDbi(>= 1.36.2), BiocManager (>= 1.30.4), ccdata(>= 1.1.2), doParallel (>= 1.0.10), data.table (>= 1.10.4), foreach (>= 1.4.3), parallel (>= 3.3.3), xgboost (>= 0.6.4), lsa (>= 0.73.1)
LinkingTo
Suggests crossmeta, knitr, rmarkdown, testthat, lydata
SystemRequirements
Enhances
URL
Depends On Me
Imports Me crossmeta
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ccmap_1.14.0.tar.gz
Windows Binary ccmap_1.14.0.zip
macOS 10.13 (High Sierra) ccmap_1.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ccmap
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ccmap
Package Short Url https://bioconductor.org/packages/ccmap/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.11 Source Archive

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: