This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see anamiR.
Bioconductor version: Release (3.11)
This package is intended to identify potential interactions of miRNA-target gene interactions from miRNA and mRNA expression data. It contains functions for statistical test, databases of miRNA-target gene interaction and functional analysis.
Author: Ti-Tai Wang [aut, cre], Tzu-Pin Lu [aut], Chien-Yueh Lee[ctb,] Eric Y. Chuang [aut]
Maintainer: Ti-Tai Wang <r04945002 at ntu.edu.tw>
Citation (from within R,
enter citation("anamiR")
):
To install this package, start R (version "4.0") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("anamiR")
For older versions of R, please refer to the appropriate Bioconductor release.
Reference Manual |
biocViews | AssayDomain, BiologicalQuestion, DifferentialExpression, GeneExpression, GeneRegulation, GeneSetEnrichment, GeneTarget, Genetics, Microarray, Normalization, Pathways, ResearchField, Sequencing, Software, Technology, WorkflowStep, miRNA |
Version | 1.16.0 |
In Bioconductor since | BioC 3.4 (R-3.3) (4 years) |
License | GPL-2 |
Depends | R (>= 3.5) |
Imports | stats, DBI, limma, lumi, agricolae, RMySQL, DESeq2, SummarizedExperiment, gplots, gage, S4Vectors |
LinkingTo | |
Suggests | knitr, rmarkdown, data.table |
SystemRequirements | |
Enhances | |
URL | https://github.com/AllenTiTaiWang/anamiR |
BugReports | https://github.com/AllenTiTaiWang/anamiR/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | |
Windows Binary | |
macOS 10.13 (High Sierra) | |
Source Repository | git clone https://git.bioconductor.org/packages/anamiR |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/anamiR |
Package Short Url | https://bioconductor.org/packages/anamiR/ |
Package Downloads Report | Download Stats |
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