Bioconductor version: Release (3.11)
Models and tools for subject level analysis of X chromosome inactivation (XCI) and XCI-escape inference.
Author: Renan Sauteraud, Dajiang Liu
Maintainer: Renan Sauteraud <rxs575 at psu.edu>
Citation (from within R,
enter citation("XCIR")
):
To install this package, start R (version "4.0") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("XCIR")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("XCIR")
HTML | R Script | Introduction to XCIR |
Reference Manual | ||
Text | NEWS |
biocViews | Coverage, RNASeq, Sequencing, Software, StatisticalMethod |
Version | 1.2.0 |
In Bioconductor since | BioC 3.10 (R-3.6) (1 year) |
License | GPL-2 |
Depends | methods |
Imports | stats, utils, data.table, IRanges, VariantAnnotation, seqminer, ggplot2, biomaRt, readxl, S4Vectors |
LinkingTo | |
Suggests | knitr, rmarkdown |
SystemRequirements | |
Enhances | |
URL | https://github.com/SRenan/XCIR |
BugReports | https://github.com/SRenan/XCIR/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | XCIR_1.2.0.tar.gz |
Windows Binary | XCIR_1.2.0.zip |
macOS 10.13 (High Sierra) | XCIR_1.2.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/XCIR |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/XCIR |
Package Short Url | https://bioconductor.org/packages/XCIR/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.11 | Source Archive |
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