TSCAN

DOI: 10.18129/B9.bioc.TSCAN    

TSCAN: Tools for Single-Cell ANalysis

Bioconductor version: Release (3.11)

TSCAN enables users to easily construct and tune pseudotemporal cell ordering as well as analyzing differentially expressed genes. TSCAN comes with a user-friendly GUI written in shiny. More features will come in the future.

Author: Zhicheng Ji, Hongkai Ji

Maintainer: Zhicheng Ji <zji4 at jhu.edu>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TSCAN")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TSCAN")

 

PDF	R Script	TSCAN: Tools for Single-Cell ANalysis
PDF		Reference Manual

Details

biocViews	GUI, GeneExpression, Software, Visualization
Version	1.26.0
In Bioconductor since	BioC 3.0 (R-3.1) (6 years)
License	GPL(>=2)
Depends	R (>= 2.10.0)
Imports	ggplot2, shiny, plyr, grid, fastICA, igraph, combinat, mgcv, mclust, gplots
LinkingTo
Suggests	knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	ctgGEM
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TSCAN_1.26.0.tar.gz
Windows Binary	TSCAN_1.26.0.zip
macOS 10.13 (High Sierra)	TSCAN_1.26.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/TSCAN
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TSCAN
Package Short Url	https://bioconductor.org/packages/TSCAN/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.11	Source Archive