Bioconductor version: Release (3.11)
NuPoP is an R package for Nucleosome Positioning Prediction.This package is built upon a duration hidden Markov model proposed in Xi et al, 2010; Wang et al, 2008. The core of the package was written in Fotran. In addition to the R package, a stand-alone Fortran software tool is also available at http://nucleosome.stats.northwestern.edu.
Author: Ji-Ping Wang <jzwang at northwestern.edu>; Liqun Xi <liqunxi02 at gmail.com>
Maintainer: Ji-Ping Wang<jzwang at northwestern.edu>
Citation (from within R,
enter citation("NuPoP")
):
To install this package, start R (version "4.0") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("NuPoP")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("NuPoP")
R Script | An R package for Nucleosome positioning prediction | |
Reference Manual |
biocViews | Classification, Genetics, Software, Visualization |
Version | 1.38.0 |
In Bioconductor since | BioC 2.7 (R-2.12) (10 years) |
License | GPL-2 |
Depends | R (>= 2.10) |
Imports | |
LinkingTo | |
Suggests | |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | nuCpos |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | NuPoP_1.38.0.tar.gz |
Windows Binary | NuPoP_1.38.0.zip (32- & 64-bit) |
macOS 10.13 (High Sierra) | NuPoP_1.38.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/NuPoP |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/NuPoP |
Package Short Url | https://bioconductor.org/packages/NuPoP/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.11 | Source Archive |
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