Bioconductor version: Release (3.11)
More than 9900 annotated position frequency matrices from 14 public sources, for multiple organisms.
Author: Paul Shannon, Matt Richards
Maintainer: Paul Shannon <pshannon at systemsbiology.org>
Citation (from within R,
enter citation("MotifDb")
):
To install this package, start R (version "4.0") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("MotifDb")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MotifDb")
HTML | R Script | A collection of PWMs |
Reference Manual | ||
Text | NEWS | |
Text | LICENSE |
biocViews | MotifAnnotation, Software |
Version | 1.30.0 |
In Bioconductor since | BioC 2.11 (R-2.15) (8 years) |
License | Artistic-2.0 | file LICENSE |
Depends | R (>= 3.5.0), methods, BiocGenerics, S4Vectors, IRanges, GenomicRanges, Biostrings |
Imports | rtracklayer, splitstackshape |
LinkingTo | |
Suggests | RUnit, seqLogo, BiocStyle, knitr, rmarkdown |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | generegulation, motifbreakR, trena |
Imports Me | igvR, rTRMui |
Suggests Me | ATACseqQC, DiffLogo, MMDiff2, motifcounter, motifStack, profileScoreDist, PWMEnrich, rTRM, TFutils, universalmotif, vtpnet |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | MotifDb_1.30.0.tar.gz |
Windows Binary | MotifDb_1.30.0.zip |
macOS 10.13 (High Sierra) | MotifDb_1.30.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/MotifDb |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MotifDb |
Package Short Url | https://bioconductor.org/packages/MotifDb/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.11 | Source Archive |
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