GladiaTOX

DOI: 10.18129/B9.bioc.GladiaTOX    

R Package for Processing High Content Screening data

Bioconductor version: Release (3.11)

GladiaTOX R package is an open-source, flexible solution to high-content screening data processing and reporting in biomedical research. GladiaTOX takes advantage of the tcpl core functionalities and provides a number of extensions: it provides a web-service solution to fetch raw data; it computes severity scores and exports ToxPi formatted files; furthermore it contains a suite of functionalities to generate pdf reports for quality control and data processing.

Author: Vincenzo Belcastro [aut, cre], Dayne L Filer [aut], Stephane Cano [aut]

Maintainer: PMP S.A. R Support <DL.RSupport at pmi.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GladiaTOX")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GladiaTOX")

 

HTML	R Script	GladiaTOX
PDF		Reference Manual
Text		NEWS

Details

biocViews	Normalization, Preprocessing, QualityControl, Software, WorkflowStep
Version	1.4.0
In Bioconductor since	BioC 3.9 (R-3.6) (1.5 years)
License	GPL-2
Depends	R (>= 3.6.0), data.table (>= 1.9.4)
Imports	DBI, RMySQL, RSQLite, numDeriv, RColorBrewer, parallel, stats, methods, graphics, grDevices, xtable, tools, brew, stringr, RJSONIO, ggplot2, ggrepel, tidyr, utils, RCurl, XML
LinkingTo
Suggests	roxygen2, knitr, rmarkdown, testthat, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GladiaTOX_1.4.0.tar.gz
Windows Binary	GladiaTOX_1.4.0.zip
macOS 10.13 (High Sierra)	GladiaTOX_1.4.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GladiaTOX
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GladiaTOX
Package Short Url	https://bioconductor.org/packages/GladiaTOX/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.11	Source Archive