GateFinder

DOI: 10.18129/B9.bioc.GateFinder    

Projection-based Gating Strategy Optimization for Flow and Mass Cytometry

Bioconductor version: Release (3.11)

Given a vector of cluster memberships for a cell population, identifies a sequence of gates (polygon filters on 2D scatter plots) for isolation of that cell type.

Author: Nima Aghaeepour <naghaeep at gmail.com>, Erin F. Simonds <erin.simonds at gmail.com>

Maintainer: Nima Aghaeepour <naghaeep at gmail.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GateFinder")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GateFinder")

 

PDF	R Script	GateFinder
PDF		Reference Manual
Text		NEWS

Details

biocViews	CellBiology, Clustering, FlowCytometry, ImmunoOncology, Software
Version	1.8.0
In Bioconductor since	BioC 3.7 (R-3.5) (2.5 years)
License	Artistic-2.0
Depends
Imports	splancs, mvoutlier, methods, stats, diptest, flowCore, flowFP
LinkingTo
Suggests	RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GateFinder_1.8.0.tar.gz
Windows Binary	GateFinder_1.8.0.zip
macOS 10.13 (High Sierra)	GateFinder_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GateFinder
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GateFinder
Package Short Url	https://bioconductor.org/packages/GateFinder/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.11	Source Archive