CALIB

DOI: 10.18129/B9.bioc.CALIB    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see CALIB.

Calibration model for estimating absolute expression levels from microarray data

Bioconductor version: Release (3.11)

This package contains functions for normalizing spotted microarray data, based on a physically motivated calibration model. The model parameters and error distributions are estimated from external control spikes.

Author: Hui Zhao, Kristof Engelen, Bart De Moor and Kathleen Marchal

Maintainer: Hui Zhao <hui.zhao at biw.kuleuven.be>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CALIB")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	Microarray, Preprocessing, Software, TwoChannel
Version	1.54.0
In Bioconductor since	BioC 2.0 (R-2.5) (13.5 years)
License	LGPL
Depends	R (>= 2.10), limma, methods
Imports	limma, methods, graphics, stats, utils
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/CALIB
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CALIB
Package Short Url	https://bioconductor.org/packages/CALIB/
Package Downloads Report	Download Stats