BayesPeak

DOI: 10.18129/B9.bioc.BayesPeak    

This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see BayesPeak.

Bayesian Analysis of ChIP-seq Data

Bioconductor version: Release (3.11)

This package is an implementation of the BayesPeak algorithm for peak-calling in ChIP-seq data.

Author: Christiana Spyrou, Jonathan Cairns, Rory Stark, Andy Lynch, Simon Tavar\\'{e},

Maintainer: Jonathan Cairns <jonathan.cairns at babraham.ac.uk>

Citation (from within R, enter citation("BayesPeak")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BayesPeak")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BayesPeak")

 

PDF R Script BayesPeak Vignette
PDF   Reference Manual

Details

biocViews ChIPSeq, Software
Version 1.39.0
In Bioconductor since BioC 2.6 (R-2.11) (10.5 years)
License GPL (>= 2)
Depends R (>= 2.14), IRanges
Imports IRanges, graphics
LinkingTo
Suggests BiocStyle, parallel
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BayesPeak_1.39.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/BayesPeak
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BayesPeak
Package Short Url https://bioconductor.org/packages/BayesPeak/
Package Downloads Report Download Stats

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