This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see BayesPeak.
Bioconductor version: Release (3.11)
This package is an implementation of the BayesPeak algorithm for peak-calling in ChIP-seq data.
Author: Christiana Spyrou, Jonathan Cairns, Rory Stark, Andy Lynch, Simon Tavar\\'{e},
Maintainer: Jonathan Cairns <jonathan.cairns at babraham.ac.uk>
Citation (from within R,
enter citation("BayesPeak")
):
To install this package, start R (version "4.0") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("BayesPeak")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BayesPeak")
R Script | BayesPeak Vignette | |
Reference Manual |
biocViews | ChIPSeq, Software |
Version | 1.39.0 |
In Bioconductor since | BioC 2.6 (R-2.11) (10.5 years) |
License | GPL (>= 2) |
Depends | R (>= 2.14), IRanges |
Imports | IRanges, graphics |
LinkingTo | |
Suggests | BiocStyle, parallel |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | BayesPeak_1.39.0.tar.gz |
Windows Binary | |
macOS 10.13 (High Sierra) | |
Source Repository | git clone https://git.bioconductor.org/packages/BayesPeak |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BayesPeak |
Package Short Url | https://bioconductor.org/packages/BayesPeak/ |
Package Downloads Report | Download Stats |
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